Issues

• Documentation typo

  nservant/HiC-Pro#690 · Filter by author quiocarbajal opened on Mar 13, 2026
  1

• HiC Pro bowtie2-align exited with value 1

  nservant/HiC-Pro#688 · Filter by author FenggChengg opened on Nov 11, 2025

• Wrong parameter name on manual

  nservant/HiC-Pro#687 · Filter by author Yoonsung1203 opened on Oct 31, 2025

• For Omni-C data processing

  nservant/HiC-Pro#686 · Filter by author normal-154 opened on Sep 8, 2025
  2

• HiC-Pro_3.1.0/scripts/ice:65: SyntaxWarning: "is" with a literal. Did you mean "=="?

  nservant/HiC-Pro#684 · Filter by author HengkuanLi opened on May 17, 2025

• Exit: Error in reads alignment - Exit

  nservant/HiC-Pro#683 · Filter by author lscnsdad opened on Apr 29, 2025
  1

• Test data run fails under SLURM configuration but succeeds with TORQUE settings

  nservant/HiC-Pro#682 · Filter by author h20gg702 opened on Apr 19, 2025

• test data with Forward and reverse reads not paired. Check that BAM files have the same read names and are sorted.

  nservant/HiC-Pro#681 · Filter by author h20gg702 opened on Apr 14, 2025
  4

• Converting Juicer Output to HiC-Pro Format for CentIER

  nservant/HiC-Pro#680 · Filter by author DayTimeMouse opened on Apr 2, 2025
  2

• error in bowtie pairing, large input data

  nservant/HiC-Pro#679 · Filter by author zihaozhu92 opened on Mar 26, 2025

• Link to Singularity container

  nservant/HiC-Pro#677 · Filter by author malonzm1 opened on Mar 18, 2025

• Ligation site for DpnII and DdeI and example config file

  nservant/HiC-Pro#675 · Filter by author ahmedabbas811 opened on Mar 16, 2025

• The bed file is always one line less than the biases file.

  nservant/HiC-Pro#674 · Filter by author oganesson76 opened on Mar 9, 2025

• Singularity image broken link

  nservant/HiC-Pro#673 · Filter by author LinuxPersonEC opened on Feb 28, 2025

• HiCPro_testdata

  nservant/HiC-Pro#672 · Filter by author wencyuan opened on Feb 28, 2025
  4

• unknown "Terminated" when Running step "Combine R1/R2 alignment files"

  nservant/HiC-Pro#671 · Filter by author MaybeBio opened on Feb 27, 2025
  3

• test dataset

  nservant/HiC-Pro#667 · Filter by author qixin271 opened on Jan 8, 2025
  2

• hicpro2higlass error interchromosomal matrices

  nservant/HiC-Pro#666 · Filter by author ToruOkadaOi opened on Dec 26, 2024

• The interpreter of ice error

  nservant/HiC-Pro#665 · Filter by author rysterzhu opened on Dec 26, 2024

• hicpro2juicebox.sh error

  nservant/HiC-Pro#664 · Filter by author lifan2022 opened on Dec 22, 2024

• matrix directory has all file sizes of zero

  nservant/HiC-Pro#663 · Filter by author lilongjuan opened on Dec 13, 2024

• Low pairing rate

  nservant/HiC-Pro#662 · Filter by author jeremymsimon opened on Dec 12, 2024

• proposed chimeric reads

  nservant/HiC-Pro#661 · Filter by author ejc043 opened on Nov 20, 2024

• mergeSAM.py error

  nservant/HiC-Pro#660 · Filter by author WanghcPKU opened on Nov 19, 2024
  4

• mergeSAM.py error

  nservant/HiC-Pro#659 · Filter by author WanghcPKU opened on Nov 19, 2024