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refactor: decompose Methods.java into focused utility classes - #90

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maxulysse wants to merge 12 commits into

nf-core:mainfrom

maxulysse:refactor/decompose-methods

Open

refactor: decompose Methods.java into focused utility classes#90
maxulysse wants to merge 12 commits into
nf-core:mainfrom
maxulysse:refactor/decompose-methods

Commits on Sep 11, 2026
- refactor: decompose Methods.java into focused utility classes
  maxulysse
  committed
  3e35d0d
- refactor: extract SanitizeOptions from OutputSanitizer.sanitizeOutput
  maxulysse
  committed
  35c515b
- fix: address code review blockers
  maxulysse
  committed
  0253bd3
- fix: implement additionalPatterns and consolidate MD5 in HashUtils
  
  maxulysse
  and
  mistral-vibe
  committed
  2634f2a
- docs: update CHANGELOG with PR links and author attributions
  maxulysse
  committed
  a0e5184
- docs: move PR #15 and @nvnieuwk to correct release (0.0.2)
  maxulysse
  committed
  24c7985
- docs: fix CHANGELOG author and release attribution errors
  maxulysse
  committed
  a4c4d5e
- docs: remove PR #13 (release prep, not docs) from CHANGELOG
  maxulysse
  committed
  0817a1b
- docs: add Jonathan Manning contribution with commit link
  maxulysse
  committed
  c7eb28d
- docs: move PR #7 to 0.0.2, attribute to both @JonathanManning and @maxulysse
  maxulysse
  committed
  4185c40
- docs: standardize CHANGELOG formatting
  maxulysse
  committed
  9ecfaed
- docs: fix PR #12 entry (ignore file, not docs)
  maxulysse
  committed
  a3e6708