pyproject.toml

[build-system]
requires = ["setuptools>=68"]
build-backend = "setuptools.build_meta"

[project]
name = "gnomancer"
version = "0.5.2"
description = "Local, private deep dive into a consumer raw DNA file (AncestryDNA, 23andMe, MyHeritage, FTDNA, LivingDNA, VCF): QC, haplogroups, traits, pharmacogenomics, one HTML report."
readme = "README.md"
license = {text = "MIT"}
requires-python = ">=3.10"
keywords = ["dna", "genetics", "23andme", "ancestrydna", "haplogroup", "pharmacogenomics", "clinvar", "mcp"]
classifiers = ["Programming Language :: Python :: 3", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Topic :: Scientific/Engineering :: Bio-Informatics"]
dependencies = ["snps>=2.9", "pandas>=2.0", "numpy>=1.24", "reportlab>=4", "lineage>=4.5", "mcp>=2"]

[project.urls]
Homepage = "https://github.com/codebase/gnomancer"
Issues = "https://github.com/codebase/gnomancer/issues"

[project.optional-dependencies]
dev = ["pytest>=8", "pyflakes>=3"]
mcp = []  # kept so `gnomancer[mcp]` still installs; mcp is now a core dependency

[project.scripts]
gnomancer = "gnomancer.cli:main"
gnomancer-mcp = "gnomancer.mcp_server:main"

[tool.setuptools]
packages = ["gnomancer"]

[tool.setuptools.package-data]
gnomancer = ["data/*"]

[tool.pytest.ini_options]
markers = ["slow: needs network for the HapMap genetic map and takes ~30s"]